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Large-Scale Dermatopathology Dataset for Lesion Segmentation: Model Development and Analysis

  • Yosep Chong
  • , Daseul Park
  • , Youngbin Ahn
  • , Yoonjin Kwak
  • , Seyeon Park
  • , Seung Wan Back
  • , Changwoo Lee
  • , Gyeongsin Park
  • , Mohammad Rizwan Alam
  • , Binna Kim
  • , Kee Taek Jang
  • , Nayoung Han
  • , Chong Woo Yoo
  • , Jonghyuck Lee
  • , Cheol Lee
  • , Young Gon Kim
  • Seoul National University
  • The Catholic University of Korea, College of Medicine
  • Samsung Medical Center, Sungkyunkwan university
  • National Cancer Center Korea
  • Ltd.

Research output: Contribution to journalArticlepeer-review

Abstract

Background: With the increasing incidence of skin cancer, the workload for pathologists has surged. The diagnosis of skin samples, especially for complex lesions such as malignant melanomas and melanocytic lesions, has shown higher diagnostic variability compared to other organ samples. Consequently, artificial intelligence (AI)-based diagnostic assistance programs are increasingly needed to support dermatopathologists in achieving more consistent diagnoses. However, large-scale skin pathology image datasets for AI learning are often insufficient or limited to specific diseases. This study aimed to build and assess a large-scale dermatopathology image dataset for an AI model. Methods: We trained and evaluated a lesion segmentation model based on this dataset, which consisted of over 34,376 histopathology slide images collected from four institutions, including normal skin and six types of common skin lesion: epidermal cysts, seborrheic keratosis, Bowen disease/squamous cell carcinoma, basal cell carcinoma, melanocytic nevus, and malignant melanoma. Each image was accompanied by labeled data consisting of lesion area annotations and clinical information. To ensure the high quality and accuracy of the dataset, we employed data quality management methods, including syntactic accuracy, semantic accuracy, statistical diversity, and validity evaluation. Results: The results of the dataset quality assessment confirmed high quality, with syntactic accuracy and semantic accuracy at 0.99 and 0.95, respectively. Statistical diversity was verified to follow a natural distribution. The validity evaluation verified the strong performance of the segmentation model for each group of data, with a Dice score ranging from 80% to 91%. Conclusion: The results demonstrated that our constructed dataset provides a well-suited resource for deep learning training, offering a large-scale multi-institutional dermatopathology dataset that can drive advancements in AI-driven dermatopathology diagnosis.

Original languageEnglish
Article numbere220
Pages (from-to)1-12
Number of pages12
JournalJournal of Korean Medical Science
Volume40
Issue number35
DOIs
StatePublished - 8 Sep 2025

Bibliographical note

Publisher Copyright:
© 2025 The Korean Academy of Medical Sciences.

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Deep Learning
  • Large-Scale Dermatopathology Dataset
  • Lesion Segmentation
  • Whole Slide Image

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