Text Extraction and Standardization System Development for Pathological Records in the Korea Biobank Network

Soojeong Ko, Sunghyeon Park, Seolwhan Oh, Yunseon Im, Surin Jung, Boyeon Choi, Jaeyoon Kim, Wona Choi, Inyoung Choi

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

In Korea, the Korea Centers for Disease Control and Prevention operates the Korea BioBank Network (KBN). KBN has pathological records that collected in Korea and it is useful dataset for research. In this study, we established system that time efficient and reduced error by step-by-step data extraction process from KBN pathological records. We tested the extraction process by 769 lung cancer cohorts and 1292 breast cancer cohorts and accuracy is 91%. We expect this system can be used to efficiently process data from multiple institutions, including Korea BioBank Network.

Original languageEnglish
Title of host publicationCaring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023
EditorsMaria Hagglund, Madeleine Blusi, Stefano Bonacina, Lina Nilsson, Inge Cort Madsen, Sylvia Pelayo, Anne Moen, Arriel Benis, Lars Lindskold, Parisis Gallos
PublisherIOS Press BV
Pages392-393
Number of pages2
ISBN (Electronic)9781643683881
DOIs
StatePublished - 18 May 2023
Event33rd Medical Informatics Europe Conference: Caring is Sharing - Exploiting the Value in Data for Health and Innovation, MIE2023 - Gothenburg, Sweden
Duration: 22 May 202325 May 2023

Publication series

NameStudies in Health Technology and Informatics
Volume302
ISSN (Print)0926-9630
ISSN (Electronic)1879-8365

Conference

Conference33rd Medical Informatics Europe Conference: Caring is Sharing - Exploiting the Value in Data for Health and Innovation, MIE2023
Country/TerritorySweden
CityGothenburg
Period22/05/2325/05/23

Bibliographical note

Publisher Copyright:
© 2023 European Federation for Medical Informatics (EFMI) and IOS Press.

Keywords

  • BioBank System
  • NLP

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